Activity-based probes have proven to be efficient tools for structural biology. Over the years a wide range of deubiquitinating and ubiquitinating enzymes have been elucidated using these probes. Here we give you an (in-comprehensive) overview of the most recent crystallizations.
- E2 enzyme: UBE2D3, probe: UbiQ-101 Ub-Dha (accession number 5IFR1)
- DUB MINDY-1, probe: UbiQ-057 : Ub-PA (accession number 5JKN, 5JQS)
- DUB UCH-L5, probe: UbiQ-057 : Ub-PA (accession number 4UEL, 4UF6)
- DUB USP4, probe: UbiQ-057 : Ub-PA (accession number 2Y6E)
- DUB CCHF, probe: UbiQ-057 : Ub-PA (accession number 3ZNH)
- DUB SARS PLpro, probe: diUb-PA (accession number 5E6J)
- DUB UCH-L1, probe: diUb-PA (accession number 3KW5)
- DUB UCH-L3, probe: diUb-PA (accession number 1XD3, 2WDT)
- DUB MCMV M48, probe: diUb-PA (accession number 2J7Q)
E1-E2-E3 enzyme probe
1st generation DUB probes: to target the S1 pocket
2nd generation DUB probes: to target the S1 and S1′ pockets
- UbiQ-081 : K6 diUb-VME
- UbiQ-082 : K11 diUb-VME
- UbiQ-083 : K27 diUb-VME
- UbiQ-084 : K29 diUb-VME
- UbiQ-085 : K33 diUb-VME
- UbiQ-086 : K48 diUb-VME
- UbiQ-087 : K63 diUb-VME
3rd generation DUB probes: to target the S1 and S2 pockets
- UbiQ-114 : K63 diUb-PA